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Module: Genome Annotation

This module will cover genome annotation analysis in Galaxy

This tutorial will introduce genome annotation process and give you hands-on experience with annotating a prokaryotic genome using Prokka.

Genome annotation with Prokka (Lecture)

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Genome annotation with Prokka (Tutorial)

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This session will introduce the Apollo genome annotation platform, and provide you hands-on experience with using Apollo in Galaxy.

Refining Genome Annotations with Apollo (Lecture)

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Refining Genome Annotations with Apollo (Tutorial)

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Tutorial Video

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Tutorial Video

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Visualisation

Circos (Krzywinski et al. 2009) is a software package for visualizing data in a circular layout. This makes Circos ideal for exploring relationships between objects or positions. Circos plots have appeared in thousands of scientific publications. Although originally designed for visualizing genomic data, it can create figures from data in any field.

Visualisation with Circos (Lecture)

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Visualisation with Circos (Tutorial)

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Vertebrate Genome Project

selfstudy tutorial

Self-study Tutorial

This is a self-study session. Please work through the materials on your own, and ask the instructors for help if you get stuck or have any questions!
image indicating this is a self-study session.

Self-study Tutorial

This is a self-study session. Please work through the materials on your own, and ask the instructors for help if you get stuck or have any questions!
image indicating this is a self-study session.

TnSeq

Lecture Video

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Self-study Tutorial

This is a self-study session. Please work through the materials on your own, and ask the instructors for help if you get stuck or have any questions!
image indicating this is a self-study session.