Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Genome annotation with Funannotate
Below are video tutorials for this GTN material, created for various (past) events.Tutorial Video (May 2023)
| Description: | Genome annotation of eukaryotes is a little more complicated than for prokaryotes: eukaryotic genomes are usually larger than prokaryotes, with more genes. The sequences determining the beginning and the end of a gene are generally less conserved than the prokaryotic ones. Many genes also contain introns, and the limits of these introns (acceptor and donor sites) are not highly conserved. In this tutorial we will use a software tool called Funannotate (Palmer and Stajich 2020) to annotate the genome sequence of a small eukaryote: Mucor mucedo (a fungal plant pathogen). |
| Length: | 1 hour 10 minutes |
| Captions: | Anthony Bretaudeau |
| Created: | 12 May 2023 |
| Materials: |
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| Support: | |
| Supported Servers: | Known Working Possibly Working |
Tutorial:
Speaker
Older versions
Tutorial Video (March 2022)
| Description: | Genome annotation of eukaryotes is a little more complicated than for prokaryotes: eukaryotic genomes are usually larger than prokaryotes, with more genes. The sequences determining the beginning and the end of a gene are generally less conserved than the prokaryotic ones. Many genes also contain introns, and the limits of these introns (acceptor and donor sites) are not highly conserved. In this tutorial we will use a software tool called Funannotate (Palmer and Stajich 2020) to annotate the genome sequence of a small eukaryote: Mucor mucedo (a fungal plant pathogen). |
| Length: | 1 hour 10 minutes |
| Captions: | Anthony Bretaudeau |
| Created: | 3 March 2022 |
| Materials: |
|
| Support: | |
| Supported Servers: | Known Working Possibly Working |