Course Builder (Beta!)
Library
admin
- Galaxy Installation with Ansible (Tutorial)
- Ansible (Lecture)
- Ansible (Tutorial)
- Connecting Galaxy to a compute cluster (Tutorial)
- Reference Data with CVMFS (Tutorial)
- Reference Data with CVMFS (Tutorial)
- Data Libraries (Tutorial)
- Galaxy Monitoring with gxadmin (Tutorial)
- Galaxy Interactive Tools (Tutorial)
- Mapping Jobs to Destinations (Tutorial)
- Recording Job Metrics (Tutorial)
- Server Maintenance and Backups (Lecture)
- Galaxy Monitoring with Telegraf and Grafana (Lecture)
- Galaxy Monitoring with Telegraf and Grafana (Tutorial)
- Distributed Object Storage (Tutorial)
- Running Jobs on Remote Resources with Pulsar (Lecture)
- Running Jobs on Remote Resources with Pulsar (Tutorial)
- Use Singularity containers for running Galaxy jobs (Tutorial)
- Training Infrastructure as a Service (TIaaS) (Tutorial)
- Galaxy Tool Management with Ephemeris (Lecture)
- Galaxy Tool Management with Ephemeris (Tutorial)
- Performant Uploads with TUS (Tutorial)
- Upgrading Galaxy (Tutorial)
- User, Role, Group and Quota managment (Lecture)
- Admin Training Week Overview (Tutorial)
- Admin Welcome (Lecture)
assembly
climate
community
computational-chemistry
contributing
event
data-science
galaxy-interface
- Running RStudio on Galaxy (Demo)
- Using dataset collections (Tutorial)
- SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis (Lecture)
- SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis (Tutorial)
- Rule Based Uploader (Tutorial)
- Uploading data to ENA (Lecture & Tutorial)
- Automating Galaxy workflows using the command line (Tutorial)
- Using Workflow Parameters (Tutorial)
- Workflow Reports (Tutorial)
dev
- Galaxy Code Architecture: app and Dependency Injection (Lecture) 🧏♀️
- Galaxy Code Architecture: Galaxy Ecosystem (Lecture) 🧏♀️
- Galaxy Code Architecture: Files and Directories (Lecture Series) 🧏♀️
- Galaxy Code Architecture: Models and Managers (Lecture) 🧏♀️
- Galaxy Code Architecture: Pluggable Components (Lecture) 🧏♀️
- Galaxy Code Architecture: Principles (Lecture)
- Galaxy Code Architecture: Project Management (Lecture)
- Galaxy Code Architecture: Web Client (Lecture) 🧏♀️
- Galaxy Code Architecture: Web Requests (Lecture) 🧏♀️
- API tests (Tutorial)
- Client Linting (Tutorial)
- Client Unit Tests (Tutorial)
- Introduction (Tutorial)
- Runtime Errors (Tutorial)
- Selenium (Tutorial)
- Debugging Wisdom (Lecture)
- Unit Testing (Tutorial)
- Tools from Scratch (Tutorial)
- ToolFactory: Generating Tools From More Complex Scripts
- ToolFactory: Generating Tools From Simple Scripts
ecology
epigenetics
galaxy-intro
galaxy
sars-cov2
genome-annotation
- Genome annotation with Prokka (Lecture)
- Genome annotation with Prokka (Tutorial)
- Refining Genome Annotations with Apollo (prokaryotes) (Lecture)
- Refining Genome Annotations with Apollo (prokaryotes) (Tutorial)
- Genome annotation with Funannotate (Tutorial)
- Masking repeats with RepeatMasker (Tutorial)
- Essential genes detection with Transposon insertion sequencing (Lecture) (Lecture) 🧏♀️
crispr
introduction
metagenomics
proteogenomics
proteomics
- EncyclopeDIA (Lecture)
- EncyclopeDIA (Tutorial)
- Introduction to proteomics, protein identification, quantification and statistical modelling (Lecture)
- MaxQuant and MSstats for the analysis of label-free data (Tutorial)
- Metaproteomics tutorial (Demo)
- Pandemics Research using Mass Spectrometry (Lecture & Demo)
- Proteogenomics 1: Database Creation (Tutorial)
- Proteogenomics 2: Database Search (Demo)
- Proteogenomics 3: Novel peptide analysis (Demo)
- Annotating a protein list identified by LC-MS/MS experiments (Tutorial)
sequence-analysis
statistics
- Convolutional Neural Networks (CNN) (Tutorial)
- Feedforward Neural Networks (FNN) (Tutorial)
- Recurrent Neural Networks (RNN) (Tutorial)
- Classification in Machine Learning (Tutorial)
- Image classification in Galaxy with fruit 360 dataset (Tutorial)
- Introduction to Machine Learning using R (Tutorial)
- Introduction to Machine Learning (Lecture)
- Regression in Machine Learning (Lecture & Tutorial)
synthetic-biology
transcriptomics
- Bulk RNA Deconvolution with MuSiC (Tutorial)
- De novo transcriptome reconstruction with RNA-Seq (Tutorial)
- Generating a single cell matrix using Alevin (Demo)
- Introduction to Transcriptomics (Lecture)
- Whole transcriptome analysis of Arabidopsis thaliana (Lecture)
- Whole transcriptome analysis of Arabidopsis thaliana (Tutorial)
- Reference-based RNA-Seq data analysis (Tutorial)
- RNA Seq Counts to Viz in R (Tutorial)
- Visualization of RNA-Seq results with Volcano Plot in R (Tutorial)
- Visualization of RNA-Seq results with Volcano Plot (Tutorial)
- Inferring Trajectories using Python (Jupyter Notebook) in Galaxy (Demo)
- An introduction to scRNA-seq data analysis (Lecture)
- Analysis of plant scRNA-Seq Data with Scanpy (Tutorial)
- Pre-processing of 10X Single-Cell RNA Datasets (Demo)
- Clustering 3K PBMCs with Scanpy (Demo)
- Filter, Plot and Explore Single-cell RNA-seq Data (Demo)
- Understanding Barcodes (Demo)
single-cell
- Bulk RNA Deconvolution with MuSiC (Tutorial)
- Inferring Trajectories using Python (Jupyter Notebook) in Galaxy (Demo)
- An introduction to scRNA-seq data analysis (Lecture)
- Analysis of plant scRNA-Seq Data with Scanpy (Tutorial)
- Pre-processing of 10X Single-Cell RNA Datasets (Demo)
- Clustering 3K PBMCs with Scanpy (Demo)
- Filter, Plot and Explore Single-cell RNA-seq Data (Demo)
visualisation
variant-analysis
webinar
wetlab
Welcome to the Course Builder!
Here you can design your own course from the GTN and Gallantries' Library of Video Content. Follow the steps below to build your course
- Start by selecting some modules from the left.
- Then re-order your content until you're happy on the next tab.
- Configure the event settings like the title, start and end time, etc.
- Preview the daily schedule.
- And receive a Markdown file that can be contributed back to this repository to host your event.
Here you can control the ordering of the content in your schedule
Who all is involved in teaching this event?
When does the course start each day
Daily lunch time
When does the course end each day
Please open a Pull Request against this repository with the following content: