Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Genome annotation with Prokka
Below are video tutorials for this GTN session, created for various (past) events.This tutorial will introduce genome annotation process and give you hands-on experience with annotating a prokaryotic genome using Prokka.
Genome annotation with Prokka (Lecture)
| Description: | Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements. |
| Length: | 3 minutes |
| Captions: | Anthony Bretaudeau |
| Created: | 15 February 2021 |
| Materials: |
|
| Support: | |
| Learning Objectives: |
|
Slides:
Genome annotation with Prokka (Tutorial)
| Description: | In this tutorial we will use Prokka to annotate a draft genome sequence. Prokka finds and annotates features (both protein coding regions and RNA genes, i.e. tRNA, rRNA) present on on a sequence. Prokka can be used to annotate bacterial, archaeal and viral genomes quickly, generating standard output files in GenBank, EMBL and gff formats.” |
| Length: | 20 minutes |
| Captions: | Anthony Bretaudeau |
| Created: | 15 February 2021 |
| Materials: |
|
| Support: | |
| Supported Servers: | Known Working Possibly Working |
| Learning Objectives: |
|
Tutorial:
