This module will cover proteomics analysis in Galaxy
Proteogenomics is a field of biological research that utilizes a combination of proteomics, genomics, and transcriptomics to aid in the discovery and identification of peptides
Proteogenomics 1: Database Creation (Tutorial)
Proteogenomics 2: Database Search (Demo)
Proteogenomics 3: Novel peptide analysis (Demo)
Data independent acquisition (DIA) mass spectrometry is a powerful technique that is improving the reproducibility and throughput of proteomics studies. EncyclopeDIA is library search engine comprised of several algorithms for DIA data analysis and can search for peptides using either DDA-based spectrum libraries or DIA-based chromatogram libraries.