Module: SARS-CoV-2 Data Analysis
This module covers the contents of the SARS-CoV-2 with Galaxy course, first run in August 2021
Introduction to Galaxy
Data Upload & Quality Control
In this sesssion, we will walk you through the basics of quality checking your sequencing data. This session consists of a lecture followed by a hands-on tutorial.
In this sesssion, we will walk you through the basics of mapping your sequencing data to a reference genome. This session consists of a lecture followed by a hands-on tutorial.
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Self-study Tutorial
This is a self-study session. Please work through the materials on your own, and ask the instructors for help if you get stuck or have any questions!
SARS-CoV-2 Data Analysis on Public Datasets
Visualisation & Data Export
Accelerating Research through data sharing
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Note: This is a training session outside of the GTN. Please contact the authors if you have questions.
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Optional Extra Training
This session will introduce the SRA Aligned Read format, and show you how to use this in Galaxy to analyze a SARS-CoV-2 dataset.
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis (Lecture)
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis (Tutorial)
Self-study Tutorial
This is a self-study session. Please work through the materials on your own, and ask the instructors for help if you get stuck or have any questions!
Case Studies: What you can do with SARS-COV-2 data
Learn what you can do with SARS-CoV-2 data
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Note: This is a training session outside of the GTN. Please contact the authors if you have questions.