Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
Below are video tutorials for this GTN material, created for various (past) events.Tutorial Video (February 2021)
| Description: | This tutorial guides you through the preprocessing of sequencing data of bronchoalveolar lavage fluid (BALF) samples obtained from early COVID-19 patients in China. Since such samples are expected to be contaminated signficantly with human sequenced reads, the goal is to enrich the data for SARS-CoV-2 reads by identifying and discarding reads of human origin before trying to assemble the viral genome sequence. |
| Length: | 25 minutes |
| Captions: | Mehmet Tekman |
| Created: | 15 February 2021 |
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| Support: | |
| Supported Servers: | Known Working Possibly Working |
Slides:
Tutorial:
