Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
Below are video tutorials for this GTN material, created for various (past) events.Video (May 2023)
| Description: | In this tutorial, we will be presenting a series of Galaxy workflows whose main goals are 1) to agnostically detect pathogens (What exactly is this pathogen and what virulence factors does it carry?) from data extracted directly (without prior cultivation) from a potentially contaminated sample (e.g. food like chicken, beef, etc.) and sequenced using Nanopore, and 2) to compare different samples to trace the possible source of contamination |
| Length: | 1 hour 45 minutes |
| Captions: | Engy Nasr |
| Created: | 1 May 2023 |
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Known Working
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Tutorial:
