Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Metatranscriptomics analysis using microbiome RNA-seq data
Below are video tutorials for this GTN material, created for various (past) events.Tutorial Video (May 2023)
| Description: | Metatranscriptomics analysis examines how the microbiome responds to the environment by studying the taxonomic composition and functional analysis of genes expressed by the microbiome, using microbial community RNASeq data and subsequent metatranscriptomics workflows. This workshop will introduce researchers to the basic concepts and tools from the ASaiM-MT workflow. ASaiM-MT provides a curated collection of tools to explore and visualize taxonomic and functional information from metatranscriptomic sequences. |
| Length: | 1 hour 5 minutes |
| Captions: | Paul Zierep |
| Created: | 17 May 2023 |
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| Support: | |
| Supported Servers: | Known Working Possibly Working |
Tutorial:
Older versions
Tutorial Video (February 2021)
| Description: | Metatranscriptomics analysis examines how the microbiome responds to the environment by studying the taxonomic composition and functional analysis of genes expressed by the microbiome, using microbial community RNASeq data and subsequent metatranscriptomics workflows. This workshop will introduce researchers to the basic concepts and tools from the ASaiM-MT workflow. ASaiM-MT provides a curated collection of tools to explore and visualize taxonomic and functional information from metatranscriptomic sequences. |
| Length: | 1 hour 30 minutes |
| Captions: | Engy Nasr, Saskia Hiltemann |
| Created: | 15 February 2021 |
| Materials: |
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| Support: | |
| Supported Servers: | Known Working Possibly Working |
