Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Interactive visualization of SummarizedExperiment objects with iSEE
Below are video tutorials for this GTN material, created for various (past) events.
Tutorial Video (July 2020)
This workshop demonstrates the use of the iSEE package to create
and configure interactive applications for the exploration of various types of
genomics data sets (e.g., bulk and single-cell RNA-seq, CyTOF, gene expression
microarray). This workshop is presented as a lab session that combines an
instructor-led live demo, followed by hands-on experimentation guided by
completely worked examples and stand-alone notes that participants may
continue to use after the workshop.
The instructor-led live demo comprises three parts:
Brief lecture on the package concept and functionality
Overview of the graphical user interface
Instructions to preconfigure iSEE apps
The hands-on lab comprises three parts:
Inspection of single-cell RNA-seq data at various steps of a typical
computational workflow, including quality control and dimensionality reduction
Addition of custom panels to the user interface for advanced visualization.
Additional questions from the participants, including individual use cases
and suggestions for future developments
No captions available for this video. We aim to have captions for all our videos, and are working to add captions to this video as soon as possible.