Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
Tidy Transcriptomics For Single-Cell RNA Sequencing Analyses
Below are video tutorials for this GTN material, created for various (past) events.
Tutorial Video (July 2022)
This tutorial will showcase analysis of single-cell RNA sequencing data
following the tidy data paradigm. The tidy data paradigm provides a standard
way to organise data values within a dataset, where each variable is a column,
each observation is a row, and data is manipulated using an easy-to-understand
vocabulary. Most importantly, the data structure remains consistent across
manipulation and analysis functions.
This can be achieved with the integration of packages present in the R CRAN
and Bioconductor ecosystem, including tidySingleCellExperiment and tidyverse.
These packages are part of the tidytranscriptomics suite that introduces a
tidy approach to RNA sequencing data representation and analysis. For more
information see the tidy transcriptomics blog.
1 hour 27 minutes
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