Warning: Please be aware that these videos are a snapshot, and as such may use an outdated version of the tutorial and/or Galaxy. Below the video you will find links to the tutorials as they appeared at the time of recording.
MungeSumstats: Standardise the format of GWAS summary statistics
Below are video tutorials for this GTN material, created for various (past) events.
Tutorial Video ()
The package is designed to handle the lack of standardisation of output
files by the GWAS community. The MRC IEU Open GWAS team have provided full
summary statistics for >10k GWAS, which are API-accessible via the ieugwasr
and gwasvcf packages. But these GWAS are only standardised in the sense that
they are VCF format, and can be fully standardised with MungeSumstats.
MungeSumstats provides a framework to standardise the format for any GWAS
summary statistics, including those in VCF format, enabling downstream
integration and analysis. It addresses the most common discrepancies across
summary statistic files, and offers a range of adjustable Quality Control
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