Below are video tutorials for this GTN session, created for various (past) events.

Want a bit more control over your Analyses? You can run R in Rstudio directly within Galaxy

data-science/rstudio-galaxy (Demo)

Description:

This tutorial will show you how you can start Rstudio from within Galaxy. This option is only available on Galaxy EU for the time being. If you are working on a different Galaxy server, you can use Rstudio Cloud (https://rstudio.cloud/)
Length: 20 minutes
Captions: Saskia Hiltemann
Created: 15 February 2021
Materials:
Support:
Go to the video page to see all versions.

Speaker

R basics in Galaxy (Tutorial)

Description:

This tutorial will provide an introduction to using R with Rstudio in Galaxy.
Length: 50 minutes
Captions: Sébastien Fouilloux, Anne Fouilloux, Kaivan Kamali
Created: 15 February 2021
Materials:
Support:
Supported Servers:
Learning Objectives:
  • Know advantages of analyzing data using R within Galaxy.
  • Compose an R script file containing comments, commands, objects, and functions.
  • Be able to work with objects (i.e. applying mathematical and logical operators, subsetting, retrieving values, etc).
Go to the video page to see all versions.

Speaker

Advanced R in Galaxy (Tutorial)

Description:

An advanced tutorial covering downstream analysis of RNA-seq data using R.
Length: 1 hour
Captions: Keith Suderman, Nadia Goué
Created: 15 February 2021
Materials:
Support:
Supported Servers:
Learning Objectives:
  • Be able to load and explore the shape and contents of a tabular dataset using base R functions.
  • Understand factors and how they can be used to store and work with categorical data.
  • Apply common `dplyr` functions to manipulate data in R.
  • Employ the ‘pipe’ operator to link together a sequence of functions.
Go to the video page to see all versions.

Speaker