Module: Climate

This module will cover climate analysis in Galaxy

This session will provide a brief overview of FATES, and guide you through a Galaxy analysis step by step.

Functionally Assembled Terrestrial Ecosystem Simulator (FATES) (Lecture)

Description:

This lecture provides a brief overview of FATES
Length: 7 minutes
Captions: Anne Fouilloux
Created: 15 February 2021
Materials:
Support:
Learning Objectives:
  • Setting up a CLM-FATES case.
  • Customizing your run.
  • Interactive visualization with Panoply.
  • Automating your analyzes and visualisations of your CLM-FATES case.
  • Creating multi-case scenarios.
  • Composing, executing and publishing CML-FATES workflow.
Go to the video page to see all versions.

Speaker

Functionally Assembled Terrestrial Ecosystem Simulator (FATES) (Tutorial)

Description:

This tutorial will walk you through a Galaxy analysis step by step
Length: 1 hour 20 minutes
Captions: Sébastien Fouilloux
Created: 15 February 2021
Materials:
Support:
Supported Servers: Known Working
Learning Objectives:
  • Setting up a CLM-FATES case.
  • Customizing your run.
  • Interactive visualization with Panoply.
  • Automating your analyzes and visualisations of your CLM-FATES case.
  • Creating multi-case scenarios.
  • Composing, executing and publishing CML-FATES workflow.
Go to the video page to see all versions.

Speaker

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Tutorial Video

Description:

In this tutorial, you will learn how to manipulate netCDF data files using Xarray Galaxy Tools. NetCDF stands for network Common Data Form and is one of the most popular file format in climate science. It is used for storing multidimensional scientific data variables such as temperature or humidity, and metadata can be added to facilitate sharing of netCDF data. netCDF is widely used outside the Climate Science community and each community has its own set of conventions, especially for metadata. The Climate and Forecast metadata convention, also called CF-convention is used by the Climate community and is designed to promote the processing and sharing of netCDF files.
Length: 1 hour 20 minutes
Captions: Anne Fouilloux
Created: 3 March 2022
Materials:
Support:
Supported Servers: Known Working
Learning Objectives:
  • Understand what Pangeo and Xarray are
  • Learn to get metadata information using Xarray Galaxy Tools
  • Learn to select data
  • Learn to visualize geographical data on a map
  • Learn to filter, make reduction operations (mean, max, min)
  • Learn to resample my data
Go to the video page to see all versions.

Speaker

Tutorial Video

Description:

In this tutorial, we will learn about Xarray, one of the most used Python library from the Pangeo ecosystem.

We will be using data from Copernicus Atmosphere Monitoring Service and more precisely PM2.5 (Particle Matter < 2.5 μm) 4 days forecast from December, 22 2021. Parallel data analysis with Pangeo is not covered in this tutorial.
Length: 17 minutes
Captions: Anne Fouilloux
Created: 3 March 2022
Materials:
Support:
Supported Servers: Known Working
Learning Objectives:
  • Learn to get metadata information using Xarray Galaxy Tools
  • Learn to select data
  • Learn to visualize data
  • Learn to filter, make reduction operations (mean, max, min)
  • Learn to resample my data
  • Learn to cite and contribute to Pangeo
Go to the video page to see all versions.

Speaker